Job Description

At Cepheid, we are passionate about improving health care through fast, accurate diagnostic testing. Our mission drives us, every moment of every day, as we develop scalable, groundbreaking solutions to solve the world's most complex health challenges. Our associates are involved in every stage of molecular diagnostics, from ideation to development and delivery of testing advancements that improve patient outcomes across a range of settings. As a member of our team, you can make an immediate, measurable impact on a global scale, within an environment that fosters career growth and development.

Cepheid is proud to work alongside a community of six fellow Danaher Diagnostics companies. Together, we're working at the pace of change on diagnostic tools that address the world's biggest health challenges, driven by knowing that behind every test there is a patient waiting.

Learn about the Danaher Business System which makes everything possible. Support of the DBS mindset and continuous improvement is integral to this role.

The Senior Bioinformatics Engineer will help create advanced, highly multiplexed molecular diagnostic assays in a multidisciplinary environment. Primary responsibilities include development and execution of robust computational pipelines for the automated and semi-automated development of primer and probe design for complex assays. Candidates must have strong programming skills and be able to operate independently, design and implement computational pipelines, and collaborate with Bioinformatics Scientists, Signal Processing Engineers, and Molecular Biologists to gather requirements and implement code in a fast-paced, rapidly changing environment. Prior experience in Bioinformatics is highly desired, but not required for this position. You will set the tone for a collaborative environment that values equity of voice, inclusive behaviors and trusting teams.

This position is part of the Biochip R&D Team and will be located in Sunnyvale CA. We value an approachable and credible communication style and we're proud of our efforts to keep all levels of the organization informed, engaged and motivated. Intellectual honesty and agility, with the ability to pivot based on shifting priorities and balance multiple projects seamlessly in a fast-paced environment, are key.

In this role, you will have the opportunity to:

Develop novel algorithms to improve the efficiency and accuracy of in silico design/simulation of complex, high performing diagnostic assays
Take ownership of your own project and make a difference that will have a wide impact across the company
Streamline workflows by building and implementing bioinformatics pipelines
Implement innovative solutions to visualize complex scientific data
Design and deploy databases, web applications and dashboards that serve the needs of scientists and engineers across multiple disciplines.

The essential requirements of the job include:

Bachelor's degree in computer science, bioinformatics, data science, or related fields with 5+ years of experience or a Masters with 3+ years of experience.
Proven experience developing tools and algorithms to help analyze/visualize scientific data; (or a proven record of independent development of tools and packages)
Proficiency with Python and git operations required;
Familiar with at least one major database platforms - MySQL, Postgresql, SQLite or NoSQL (e.g. MongoDB)

It would be a plus if you also possess previous experience in:

Workflow management tools such as Snakemake or Nextflow
Full stack development using modern platforms such as React, Vue.js, Flask, Dash, D3, etc.
Setting up a CI/CD workflow

Cepheid, a Danaher company, offers a broad array of comprehensive, competitive benefit programs that add value to our lives. Whether it's a health care program or paid time off, our programs contribute to life beyond the job. Check out our benefits at danaherbenefitsinfo.com.

The salary range for this role is $130K - $150K. This is the range that we in good faith believe is the range of possible compensation for this role at the time of this posting. We may ultimately pay more or less than the posted range. This range may be modified in the future.

This job is also eligible for bonus/incentive pay.

We offer comprehensive package of benefits including paid time off, medical/dental/vision insurance and 401(k) to eligible employees.

Note: No amount of pay is considered to be wages or compensation until such amount is earned, vested, and determinable. The amount and availability of any bonus, commission, benefits, or any other form of compensation and benefits that are allocable to a particular employee remains in the Company's sole discretion unless and until paid and may be modified at the Company's sole discretion, consistent with the law.

When you join us, you'll also be joining Danaher's global organization, where 80,000 people wake up every day determined to help our customers win. As an associate, you'll try new things, work hard, and advance your skills with guidance from dedicated leaders, all with the support of powerful Danaher Business System tools and the stability of a tested organization.

Danaher Corporation and all Danaher Companies are committed to equal opportunity regardless of race, color, national origin, religion, sex, age, marital status, disability, veteran status, sexual orientation, gender identity, or other characteristics protected by law. We value diversity and the existence of similarities and differences, both visible and not, found in our workforce, workplace and throughout the markets we serve. Our associates, customers and shareholders contribute unique and different perspectives as a result of these diverse attributes.

The EEO posters are available here.

We will ensure that individuals with disabilities are provided reasonable accommodation to participate in the job application or interview process, to perform crucial job functions, and to receive other benefits and privileges of employment. Please contact us at [email protected] to request accommodation.

If you've ever wondered what's within you, there's no better time to find out.

This job was posted on Thu Aug 10 2023 and expired on Sun Aug 20 2023.

Minimum $129K /yr

$172K /yr Average

Maximum $215K /yr

Tasks

Develop new software applications or customize existing applications to meet specific scientific project needs.

Communicate research results through conference presentations, scientific publications, or project reports.

Create novel computational approaches and analytical tools as required by research goals.

Consult with researchers to analyze problems, recommend technology-based solutions, or determine computational strategies.

Analyze large molecular datasets, such as raw microarray data, genomic sequence data, or proteomics data, for clinical or basic research purposes.

Keep abreast of new biochemistries, instrumentation, or software by reading scientific literature and attending professional conferences.

Develop data models and databases.

Compile data for use in activities, such as gene expression profiling, genome annotation, or structural bioinformatics.

Design and apply bioinformatics algorithms including unsupervised and supervised machine learning, dynamic programming, or graphic algorithms.

Manipulate publicly accessible, commercial, or proprietary genomic, proteomic, or post-genomic databases.

Direct the work of technicians and information technology staff applying bioinformatics tools or applications in areas such as proteomics, transcriptomics, metabolomics, or clinical bioinformatics.

Provide statistical and computational tools for biologically based activities, such as genetic analysis, measurement of gene expression, or gene function determination.

Create or modify web-based bioinformatics tools.

Improve user interfaces to bioinformatics software and databases.

Confer with departments, such as marketing, business development, or operations, to coordinate product development or improvement.

Recommend new systems and processes to improve operations.

Instruct others in the selection and use of bioinformatics tools.

Collaborate with software developers in the development and modification of commercial bioinformatics software.

Test new and updated bioinformatics tools and software.

Prepare summary statistics of information regarding human genomes.

Skills

Reading Comprehension - Understanding written sentences and paragraphs in work related documents.

Active Listening - Giving full attention to what other people are saying, taking time to understand the points being made, asking questions as appropriate, and not interrupting at inappropriate times.

Writing - Communicating effectively in writing as appropriate for the needs of the audience.

Speaking - Talking to others to convey information effectively.

Mathematics - Using mathematics to solve problems.

Science - Using scientific rules and methods to solve problems.

Critical Thinking - Using logic and reasoning to identify the strengths and weaknesses of alternative solutions, conclusions or approaches to problems.

Active Learning - Understanding the implications of new information for both current and future problem-solving and decision-making.

Monitoring - Monitoring/Assessing performance of yourself, other individuals, or organizations to make improvements or take corrective action.

Social Perceptiveness - Being aware of others' reactions and understanding why they react as they do.

Complex Problem Solving - Identifying complex problems and reviewing related information to develop and evaluate options and implement solutions.

Judgment and Decision Making - Considering the relative costs and benefits of potential actions to choose the most appropriate one.

Systems Analysis - Determining how a system should work and how changes in conditions, operations, and the environment will affect outcomes.

Systems Evaluation - Identifying measures or indicators of system performance and the actions needed to improve or correct performance, relative to the goals of the system.

Time Management - Managing one's own time and the time of others.

Knowledge

Clerical - Knowledge of administrative and clerical procedures and systems such as word processing, managing files and records, stenography and transcription, designing forms, and other office procedures and terminology.

Computers and Electronics - Knowledge of circuit boards, processors, chips, electronic equipment, and computer hardware and software, including applications and programming.

Mathematics - Knowledge of arithmetic, algebra, geometry, calculus, statistics, and their applications.

Chemistry - Knowledge of the chemical composition, structure, and properties of substances and of the chemical processes and transformations that they undergo. This includes uses of chemicals and their interactions, danger signs, production techniques, and disposal methods.

Biology - Knowledge of plant and animal organisms, their tissues, cells, functions, interdependencies, and interactions with each other and the environment.

Education and Training - Knowledge of principles and methods for curriculum and training design, teaching and instruction for individuals and groups, and the measurement of training effects.

English Language - Knowledge of the structure and content of the English language including the meaning and spelling of words, rules of composition, and grammar.